My Publications

You can find my full publications list on ORCiD or Google Scholar

2025

Spatial ERC (preprint)

APOE E4 Alzheimer’s Risk Converges on an Oligodendrocyte Subtype in the Human Entorhinal Cortex

• DOI: https://doi.org/10.1101/2025.11.20.689483

• Pre-printed 11/20/2025

• Blue sky post

Deconvolution Benchmark

Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex

• DOI: https://doi.org/10.1186/s13059-025-03552-3

• Pre-printed 4/7/2024, DOI: https://doi.org/10.1101/2024.02.09.579665

• Software tools and data available through R Package DeconvoBuddies

• Tweetorial

2024

spatialDLPFC

A data-driven single cell and spatial transcriptomic map of the human prefrontal cortex

• DOI: https://doi.org/10.1126/science.adh1938

• Pre-printed 2/15/2023, DOI: 10.1101/2023.02.15.528722

• Exciting new work on spatial transcritomics & snRNA-seq in the human DLPFC!

• Explore this data at research.libd.org/spatialDLPFC/

• Tweetorial

2023

TREG

Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue

• DOI: 10.1186/s13059-023-03066-w

• Pre-print DOI: 10.1101/2022.04.28.489923

• My first first-author paper is now in published by Genome Biology! This pairs with my first Bioconductor R package TREG

You can find my full publications list on ORCiD or Google Scholar

Presentations

Slides and posters and available on my speakerdeck